Hidden objectives: 
  
Mission 1: Destroy the spy ship. 
Mission 2: Allow no enemy craft to land on the beach. 
Mission 3: Destroy all walking Starfighters in the hanger. 
Mission 4: Destoy all Tractor Beam Towers. 
Mission 5: Destroy all enemies. 
Mission 6: Finish mission in under nine minutes. 
Mission 7: Destroy all three Trade Federation Freighters. 
Mission 8: Destroy all Landers and Super Freighters. 
Mission 9: Prevent all Hex Deployers from escaping. 
Mission 10: Lose no friendly Tugs. 
Mission 11: Destroy all Trade Federation Landers. 
Mission 12: Destroy all Turrets. 
Mission 13: Destroy all Bunkers. 
Mission 14: All Mere Transports must survive. 
Mission 15: All Mere Cruisers must survive. 
  

Hidden objectives for two player mode: 
  
Mission 1: Complete mission in four minutes or less. 
Mission 2: Destroy all Trade Federation Carriers. 
Mission 3: Destroy all station doors. 
Mission 4: Destroy all Trade Federation Sub docks. 
Mission 5: Protect all buildings. 
Mission 6: Destroy all containers. 
Mission 7: Destroy all Sabaoth crafts. 
Mission 8: Destroy all defense barracks. 
Mission 9: Prevent all Drop Ships from landing. 
Misson 10: Destroy "Reavers". 
Mission 11: Destroy all Missile Frigate groups. 
Mission 12: Destroy Cruiser without using the orbital cannon. 
Mission 13: Lose no Clones. 
Mission 14: Remove all of Toth's shields. 
Mission 15: Destroy all turrets on Destroyers and Flagships.